This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q70C.1

Cameroon/LOC_000Q70C.1/2023-11-06
A. Namekong Fokeng, A. Paguem, M. Gasparine, K. Tanyi Manchang, F. Fewou Mfoujouem, S. Mvodo, R. Charrel, X. De Lamballerie & A. Falchi

Unite des Virus Emergents, Universite de Corse, Sciences et Techniques

Sample details

Collection date
2023-11-06
Earliest release date
2025-12-28
Sampling location
Cameroon
Isolate name
11-2

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 17:39insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-12-28
INSDC accession M segment

Submission details

Submission ID
PX659870.2.M
Submitting group
Date submitted
2026-03-26 17:39:08 UTC
Date released
2026-03-26 17:43:53 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs M segment
297
Total inserted nucs M segment
8
Total deleted nucs M segment
30
Total unknown nucs M segment
2850
Total frame shifts M segment
6
Frame shifts M segment
GPC:43-94(nt:214-370),GPC:113-129(nt:423-474),GPC:138-550(nt:500-1738),GPC:583-1069(nt:1835-3294),GPC:1077-1091(nt:3317-3360),GPC:1104-1685(nt:3396-5143)
Length M segment
4200 (25.1%)
Variant M segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • T169A
  • G170A
  • A171C
  • C173G
  • A177C
  • A180T
  • T181G
  • G188C
  • T189C
  • T190A
  • A191G
  • C195T
  • G199T
  • C218T
  • T220C
  • G221C
  • C225A
  • G232T
Deletions

M segment

200-213, 256, 257, 332, 371-374, 422, 458, 475, 1834, 3188, 3295, 3361, 3395, 4082
Insertions

M segment

ins_298:AAG, ins_499:TA, ins_1738:A, ins_3316:T, ins_4336:G

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:V34T
  • GPC:M35D
  • GPC:T37M
  • GPC:T99R
  • GPC:T100P
  • GPC:S101A
  • GPC:V102H
  • GPC:V103N
  • GPC:A107E
  • GPC:S108A
  • GPC:T110V
  • GPC:P130S
  • GPC:S132P
  • GPC:P133S
  • GPC:S134T
  • GPC:T135P
  • GPC:P136S
  • GPC:D551E
Deletions

GPC

GPC:38-42, GPC:95, GPC:96, GPC:112, GPC:1103
Insertions
N/A

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