This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SPJP.1

Guinea/LOC_000SPJP.1/2024-12-11
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, M. Y. Kartashov, A. V. Shipovalov, A. B. Ibrahim, E. A. Basov, A. P. Smolina, N. P. Guseva, T. A. Polunina, N. V. Kotova, S. D. Katyshev, S. Boumbaly & M. S. Traore

Russian Antiplague Research Institute 'Microbe', Microbiology

Sample details

Collection date
2024-12-11
Earliest release date
2025-08-09
Sampling location
Guinea
Isolate name
599

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 17:39insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-09
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
PV987603.1.L/PV987595.1.M/PV987587.1.S
Submitting group
Date submitted
2026-03-26 17:39:10 UTC
Date released
2026-03-26 17:47:42 UTC

Host

Host

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs L
429
Total inserted nucs L
3
Total unknown nucs L
1092
Length L
11970 (89.8%)
Variant L
True
Total SNPs S
182
Total inserted nucs S
6
Total unknown nucs S
116
Length S
1658 (91.9%)
Variant S
True
Total SNPs M
491
Total unknown nucs M
1275
Length M
3897 (48.9%)
Variant M
True

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G93A
  • A113G
  • C193T
  • C205T
  • G217A
  • C223T
  • T253C
  • T254A
  • G301A
  • C313T
  • T340C
  • C343T
  • A388G
  • C421T
  • T517C
  • C541T
  • G553A
  • A571G

M

  • C581A
  • T582A
  • G584A
  • G585A
  • A587C
  • A588C
  • C593T
  • G597A
  • A598C
  • G599A
  • T603A
  • C607A
  • A608G
  • T620A
  • C621T
  • A622C
  • T623C
  • C624T

S

  • G20T
  • G54A
  • G67A
  • C82T
  • G134A
  • G136A
  • C142T
  • C154T
  • T155C
  • C166T
  • G169A
  • T175C
  • C178A
  • T182C
  • G189A
  • G190A
  • C208T
  • C235T
Deletions
N/A
Insertions

L

ins_6457:NAN

S

ins_1539:NTCAC, ins_1580:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:S164T
  • GPC:G165S
  • GPC:T166P
  • GPC:E169T
  • GPC:S171T
  • GPC:A172E
  • GPC:H177S
  • GPC:P178S
  • GPC:S180I
  • GPC:N181S
  • GPC:R182E
  • GPC:P183T
  • GPC:A190T
  • GPC:G192A
  • GPC:D197Q
  • GPC:S198C
  • GPC:H199P
  • GPC:A201T

NP

  • NP:V27I
  • NP:Y34H
  • NP:R45K
  • NP:S109N
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S301G
  • NP:V436I
  • NP:T439K

RdRp

  • RdRp:S6N
  • RdRp:I13V
  • RdRp:Y60N
  • RdRp:N206Y
  • RdRp:S498N
  • RdRp:I505T
  • RdRp:C648S
  • RdRp:K673R
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:P774L
  • RdRp:G778D
  • RdRp:N779S
  • RdRp:S782D
  • RdRp:I783V
  • RdRp:K809R
  • RdRp:G812E
Deletions
N/A
Insertions

RdRp

ins_RdRp:2127:X

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