This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SPYV.1

Cameroon/LOC_000SPYV.1/2023-11-06
A. Namekong Fokeng, A. Paguem, M. Gasparine, K. Tanyi Manchang, F. Fewou Mfoujouem, S. Mvodo, R. Charrel, X. De Lamballerie & A. Falchi

Unite des Virus Emergents, Universite de Corse, Sciences et Techniques

Sample details

Collection date
2023-11-06
Earliest release date
2025-12-28
Sampling location
Cameroon
Isolate name
11-2

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 17:39insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-12-28
INSDC accession M

Submission details

Submission ID
PX659870.2.M
Submitting group
Date submitted
2026-03-26 17:39:10 UTC
Date released
2026-03-26 17:47:42 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs M
284
Total inserted nucs M
7
Total deleted nucs M
17
Total unknown nucs M
2850
Total frame shifts M
5
Frame shifts M
GPC:38-94(nt:202-374),GPC:114-129(nt:430-477),GPC:138-547(nt:504-1733),GPC:583-1091(nt:1839-3364),GPC:1103-1685(nt:3397-5147)
Length M
4200 (25.3%)
Variant M
True

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • C194T
  • G207A
  • C217T
  • T224C
  • G225C
  • C229A
  • G236T
  • G238C
  • C239A
  • A240C
  • C241G
  • G243C
  • C245T
  • T246C
  • T247G
  • T249C
  • T251C
  • T254C
Deletions

M

201, 216, 260, 261, 335, 375-378, 429, 462, 478, 1838, 3192, 3365, 3396, 4086
Insertions

M

ins_302:AAG, ins_503:TA, ins_1733:G, ins_4340:G

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:M35D
  • GPC:V98A
  • GPC:T99R
  • GPC:T100P
  • GPC:G101A
  • GPC:T102H
  • GPC:D103N
  • GPC:L105S
  • GPC:A107E
  • GPC:G108A
  • GPC:P112M
  • GPC:P130S
  • GPC:N131S
  • GPC:S132P
  • GPC:P133S
  • GPC:S134T
  • GPC:T135P
  • GPC:P136S
Deletions

GPC

GPC:37, GPC:95, GPC:96, GPC:113, GPC:1092, GPC:1102
Insertions
N/A

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